STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2357PFAM: KaiC domain protein; KEGG: mhu:Mhun_1170 putative circadian clock protein, KaiC. (232 aa)    
Predicted Functional Partners:
Mboo_2356
KEGG: mhu:Mhun_1171 HTR-like protein.
       0.838
Mboo_2354
PFAM: type II secretion system protein; KEGG: mhu:Mhun_1173 type II secretion system protein.
 
     0.700
Mboo_2355
PFAM: type II secretion system protein E; KEGG: mhu:Mhun_1172 type II secretion system protein E.
 
   
 0.684
Mboo_1485
PFAM: KaiB domain protein; KEGG: mma:MM1091 thiol-disulfide isomerase.
 
     0.676
Mboo_1486
PFAM: KaiB domain protein; KEGG: mma:MM1092 thiol-disulfide isomerase.
 
     0.671
Mboo_2352
KEGG: mhu:Mhun_0879 hypothetical protein.
       0.480
Mboo_2353
KEGG: mtp:Mthe_1013 hypothetical protein.
       0.480
atpF
Vacuolar H+-transporting two-sector ATPase, F subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.400
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.