STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2377PFAM: extracellular solute-binding protein, family 5; KEGG: pho:PH0807 putative oligopeptide transport system substrate-binding protein. (552 aa)    
Predicted Functional Partners:
Mboo_2378
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: deh:cbdb_A1462 peptide ABC transporter, permease protein.
 0.999
Mboo_2379
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: deh:cbdb_A1461 peptide ABC transporter, permease protein.
 0.997
Mboo_2380
KEGG: mac:MA0879 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
 
 0.995
Mboo_2381
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mma:MM3323 oligopeptide transporter, ATP-binding protein.
 0.993
Mboo_2434
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_2311 ABC transporter related.
 
  
 0.726
Mboo_0782
Multi-sensor signal transduction histidine kinase; KEGG: mhu:Mhun_1958 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.636
Mboo_1918
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mhu:Mhun_2982 phosphate ABC transporter, permease protein PstC.
     
 0.613
Mboo_1354
PFAM: homoserine dehydrogenase; homoserine dehydrogenase, NAD-binding; KEGG: mhu:Mhun_2292 homoserine dehydrogenase.
 
   
 0.511
Mboo_1489
Legumain; PFAM: Peptidase C13, legumain; Extracellular ligand-binding receptor; KEGG: mhu:Mhun_0488 legumain.
 
  
 0.504
Mboo_2256
PFAM: ABC-2 type transporter; KEGG: mtp:Mthe_1227 ABC-2 type transporter.
 
  
 0.485
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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