STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2428PFAM: protein of unknown function DUF111; KEGG: mhu:Mhun_2452 protein of unknown function DUF111; Belongs to the LarC family. (401 aa)    
Predicted Functional Partners:
Mboo_2123
PFAM: PP-loop domain protein; KEGG: mtp:Mthe_0693 PP-loop domain protein.
  
 0.988
Mboo_1732
KEGG: mhu:Mhun_2916 AIR carboxylase.
 
  
 0.935
radB
DNA repair and recombination protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange.
       0.838
Mboo_2427
KEGG: mhu:Mhun_2451 AAA family ATPase, CDC48 subfamily; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein domain protein; AAA ATPase, central domain protein; cell division protein 48, CDC48, domain 2; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
       0.600
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
      0.598
Mboo_2430
KEGG: syn:sll0779 PleD; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.563
Mboo_0796
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mba:Mbar_A2721 hypothetical protein.
 
    0.547
cbiM
Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
  
    0.487
Mboo_1637
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: mba:Mbar_A2565 cobalamin biosynthesis protein.
  
    0.487
Mboo_1638
KEGG: mba:Mbar_A2564 cobalamin biosynthesis protein.
  
    0.487
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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