STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2440KEGG: mhu:Mhun_2305 hypothetical protein. (312 aa)    
Predicted Functional Partners:
Mboo_2439
KEGG: mhu:Mhun_2306 hypothetical protein.
       0.879
Mboo_2435
KEGG: mhu:Mhun_2310 hypothetical protein; Belongs to the UPF0288 family.
       0.878
Mboo_2436
KEGG: mhu:Mhun_2309 hypothetical protein.
       0.878
Mboo_2437
KEGG: mhu:Mhun_2308 hypothetical protein.
       0.878
Mboo_2438
TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mhu:Mhun_2307 CoA enzyme activase.
       0.878
Mboo_2434
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_2311 ABC transporter related.
       0.873
Mboo_2441
TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mhu:Mhun_2298 alkylhydroperoxidase AhpD core.
       0.826
Mboo_2433
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mhu:Mhun_2312 haloacid dehalogenase-like hydrolase.
       0.665
Mboo_2442
KEGG: pab:PAB1605 asparagine synthase (glutamine-hydrolysing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase.
       0.449
Mboo_1552
PFAM: CBS domain containing protein; peptidase M50; KEGG: mhu:Mhun_0613 peptidase M50; Belongs to the peptidase M50B family.
  
    0.432
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.