STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2457PFAM: KH, type 2 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: mhu:Mhun_2465 KH, type 1. (181 aa)    
Predicted Functional Partners:
rps4
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 0.998
rps11
Ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
 0.997
Mboo_0246
KEGG: mhu:Mhun_2862 nucleotide binding protein, PINc.
   
 0.991
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
 
 0.990
Mboo_0516
PFAM: Pre-mRNA processing ribonucleoprotein, binding region; KEGG: mhu:Mhun_2265 pre-mRNA processing ribonucleoprotein, binding region.
  
 
 0.987
Mboo_2321
PFAM: protein of unknown function RIO1; KEGG: mhu:Mhun_2603 protein of unknown function RIO1.
   
 
 0.982
rps6e
PFAM: ribosomal protein S6e; KEGG: mhu:Mhun_2488 ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.979
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: mhu:Mhun_2508 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
 
 0.973
rps15
PFAM: ribosomal protein S15; Ribosomal S13S15-like; KEGG: mhu:Mhun_2511 ribosomal S13S15-like.
  
 0.966
rps7
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
   
 0.963
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.