STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opsXBelongs to the glycosyltransferase 9 family; KEGG: vvu:VV1_0816 heptosyltransferase I; Glycosyltransferases; overlaps another CDS with the same product name. (352 aa)    
Predicted Functional Partners:
kdkA
3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
 
 
 
 0.951
waaE
Belongs to the glycosyltransferase 2 family. WaaE/KdtX subfamily; KEGG: vcx:VAA049_3477 (heptosyl)LPS beta-1,4-glucosyltransferase; Hexosyltransferases; overlaps another CDS with the same product name.
 
  
 0.891
waaF
ADP-heptose--LPS heptosyltransferase; Belongs to the glycosyltransferase 9 family; KEGG: vch:VC0236 heptosyltransferase II; Glycosyltransferases.
 
  
 0.875
gmhC
D-glycero-beta-D-manno-heptose-7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
  
 0.786
kdtA
Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
   
 0.771
ANS84152.1
Uncharacterized protein; KEGG: hpk:Hprae_0259 heptosyltransferase I; Glycosyltransferases.
  
   
 0.765
gmhB
D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase; Converts the D-glycero-beta-D-manno-heptose 1,7- bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1- phosphate by removing the phosphate group at the C-7 position; Belongs to the GmhB family; KEGG: vch:VC0908 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase.
 
   
 0.740
ANS86238.1
Putative ferredoxin-like protein; Contains 2 4Fe-4S ferredoxin-type domains.
  
   0.719
ANS84157.1
Inner membrane protein; To H. influenzae HI_0842.
 
     0.637
gmhA
D-sedoheptulose 7-phosphate isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
   
 0.604
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.