Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ANS84253.1 | ANS84257.1 | VSVS12_00436 | VSVS12_00440 | Hypothetical protein. | Fimbrial assembly protein PilQ; Essential for the formation of pili. Involved in the biogenesis of type 4 fimbriae probably by serving as a 'porthole' allowing passage of the fimbrae through the outer membrane. Belongs to the GSP D family. | 0.978 |
| ANS84253.1 | mrcA | VSVS12_00436 | VSVS12_00435 | Hypothetical protein. | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | 0.616 |
| ANS84257.1 | ANS84253.1 | VSVS12_00440 | VSVS12_00436 | Fimbrial assembly protein PilQ; Essential for the formation of pili. Involved in the biogenesis of type 4 fimbriae probably by serving as a 'porthole' allowing passage of the fimbrae through the outer membrane. Belongs to the GSP D family. | Hypothetical protein. | 0.978 |
| ANS84257.1 | mrcA | VSVS12_00440 | VSVS12_00435 | Fimbrial assembly protein PilQ; Essential for the formation of pili. Involved in the biogenesis of type 4 fimbriae probably by serving as a 'porthole' allowing passage of the fimbrae through the outer membrane. Belongs to the GSP D family. | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | 0.643 |
| ANS87954.1 | dacC | VSVS12_04255 | VSVS12_00912 | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: amt:Amet_2528 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: vcy:IX92_11620 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | 0.902 |
| ANS87954.1 | mrcA | VSVS12_04255 | VSVS12_00435 | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: amt:Amet_2528 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | 0.915 |
| dacC | ANS87954.1 | VSVS12_00912 | VSVS12_04255 | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: vcy:IX92_11620 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: amt:Amet_2528 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | 0.902 |
| dacC | mrcA | VSVS12_00912 | VSVS12_00435 | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: vcy:IX92_11620 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | 0.915 |
| dacC | mrdA | VSVS12_00912 | VSVS12_00915 | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: vcy:IX92_11620 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | Penicillin-binding protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.661 |
| dacC | mrdB | VSVS12_00912 | VSVS12_00914 | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: vcy:IX92_11620 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.661 |
| ftsI | mrcA | VSVS12_02567 | VSVS12_00435 | Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | 0.614 |
| ftsI | mrcB | VSVS12_02567 | VSVS12_00686 | Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | 0.864 |
| ftsI | mrdA | VSVS12_02567 | VSVS12_00915 | Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Penicillin-binding protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.942 |
| ftsI | mrdB | VSVS12_02567 | VSVS12_00914 | Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.949 |
| ftsI | murC | VSVS12_02567 | VSVS12_02560 | Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.931 |
| lpoA | mrcA | VSVS12_02571 | VSVS12_00435 | Penicillin-binding protein activator LpoA; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family. | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | 0.804 |
| mrcA | ANS84253.1 | VSVS12_00435 | VSVS12_00436 | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | Hypothetical protein. | 0.616 |
| mrcA | ANS84257.1 | VSVS12_00435 | VSVS12_00440 | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | Fimbrial assembly protein PilQ; Essential for the formation of pili. Involved in the biogenesis of type 4 fimbriae probably by serving as a 'porthole' allowing passage of the fimbrae through the outer membrane. Belongs to the GSP D family. | 0.643 |
| mrcA | ANS87954.1 | VSVS12_00435 | VSVS12_04255 | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: amt:Amet_2528 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | 0.915 |
| mrcA | dacC | VSVS12_00435 | VSVS12_00912 | Penicillin-binding protein 1A; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity); In the N-terminal sectio; belongs to the glycosyltransferase 51 family; In the C-terminal sectio; belongs to the transpeptidase family; KEGG: ddc:Dd586_3807 penicillin-binding protein 1A; Hexosyltransferases. | Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Belongs to the peptidase S11 family; KEGG: vcy:IX92_11620 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). | 0.915 |
page 1 of 3