STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS84340.1Magnesium transporter MgtE; Acts as a magnesium transporter. (451 aa)    
Predicted Functional Partners:
ANS84341.1
Phosphocarrier protein NPr; Component of the phosphoenolpyruvate-dependent nitrogen- metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein NPr by enzyme I-Ntr. Phospho-NPr then transfers it to EIIA-Ntr. Could function in the transcriptional regulation of sigma-54 dependent operons in conjunction with the NPr (PtsO) and EIIA-Ntr (PtsN) proteins (By similarity); Belongs to the HPr family; Contains 1 HPr domain.
     
 0.534
ANS84342.1
RNase adapter protein RapZ; Displays ATPase and GTPase activities.
       0.522
ptsN
Protein-N(pi)-phosphohistidine--sugar phosphotransferase; Seems to have a role in regulating nitrogen assimilation; Contains 1 PTS EIIA type-2 domain; KEGG: pmr:PMI3646 PTS system, nitrogen regulatory IIA component.
       0.522
ANS84344.1
Ribosome hibernation promoting factor; During stationary phase, promotes and stabilizes dimerization of 70S ribosomes, leading to the formation of inactive 100S ribosomes; Belongs to the Hpf/RaiA ribosome-associated protein family. Hpf subfamily.
       0.522
ANS84345.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.485
kdsD
Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily; Contains 2 CBS domains; Contains 1 SIS domain; KEGG: vcy:IX92_01075 arabinose-5-phosphate isomerase.
       0.484
ANS84351.1
Inner membrane protein; Belongs to the sodium/potassium/calcium exchanger family.
   
   0.451
lptB
Lipopolysaccharide export system ATP-binding protein LptB; Part of the ABC transporter complex LptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. Probably responsible for energy coupling to the transport system (By similarity); Belongs to the ABC transporter superfamily. Outer membrane lipopolysaccharide export (TC 1. B. 42) family; Contains 1 ABC transporter domain; KEGG: vch:VC2528 lipopolysaccharide export system ATP-binding protein; Acting on acid anhydrides; catalyzing transmembrane movement of substances.
       0.424
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
       0.424
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
       0.424
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.