Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ANS84344.1 | ANS84345.1 | VSVS12_00538 | VSVS12_00539 | Ribosome hibernation promoting factor; During stationary phase, promotes and stabilizes dimerization of 70S ribosomes, leading to the formation of inactive 100S ribosomes; Belongs to the Hpf/RaiA ribosome-associated protein family. Hpf subfamily. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.800 |
| ANS84344.1 | ptsN | VSVS12_00538 | VSVS12_00537 | Ribosome hibernation promoting factor; During stationary phase, promotes and stabilizes dimerization of 70S ribosomes, leading to the formation of inactive 100S ribosomes; Belongs to the Hpf/RaiA ribosome-associated protein family. Hpf subfamily. | Protein-N(pi)-phosphohistidine--sugar phosphotransferase; Seems to have a role in regulating nitrogen assimilation; Contains 1 PTS EIIA type-2 domain; KEGG: pmr:PMI3646 PTS system, nitrogen regulatory IIA component. | 0.930 |
| ANS84345.1 | ANS84344.1 | VSVS12_00539 | VSVS12_00538 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ribosome hibernation promoting factor; During stationary phase, promotes and stabilizes dimerization of 70S ribosomes, leading to the formation of inactive 100S ribosomes; Belongs to the Hpf/RaiA ribosome-associated protein family. Hpf subfamily. | 0.800 |
| ANS84345.1 | ANS84831.1 | VSVS12_00539 | VSVS12_01061 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Luminescence regulatory protein LuxO; Acts negatively to control the expression of luminescence. At low cell density, LuxO is phosphorylated, and together with sigma-54, causes repression of the luxCDABEGH operon. This repression could be indirect, LuxO could activate a negative regulator of luminescence. At high cell density, LuxO is dephosphorylated and inactive, therefore the luxCDABEGH operon is not repressed and light is emitted. LuxO and sigma-54 have also a role in activating the production of siderophore and in regulating the rugose colony morphology phenotype; Contains 1 respo [...] | 0.805 |
| ANS84345.1 | ANS85539.1 | VSVS12_00539 | VSVS12_01772 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Member of the two-component regulatory system MtrA/MtrB; Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 1 response regulatory domain. | 0.806 |
| ANS84345.1 | ANS86069.1 | VSVS12_00539 | VSVS12_02308 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Required for the expression of anaerobic nitric oxide (NO) reductase, acts as a transcriptional activator for at least the norVW operon. Activation also requires sigma-54; Contains 1 sigma-54 factor interaction domain. | 0.812 |
| ANS84345.1 | ptsN | VSVS12_00539 | VSVS12_00537 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Protein-N(pi)-phosphohistidine--sugar phosphotransferase; Seems to have a role in regulating nitrogen assimilation; Contains 1 PTS EIIA type-2 domain; KEGG: pmr:PMI3646 PTS system, nitrogen regulatory IIA component. | 0.834 |
| ANS84345.1 | rpoA | VSVS12_00539 | VSVS12_00496 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.878 |
| ANS84345.1 | rpoB | VSVS12_00539 | VSVS12_02936 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.853 |
| ANS84345.1 | rpoC | VSVS12_00539 | VSVS12_02935 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.848 |
| ANS84345.1 | rpoS | VSVS12_00539 | VSVS12_02776 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.933 |
| ANS84345.1 | rpoZ | VSVS12_00539 | VSVS12_00316 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.838 |
| ANS84831.1 | ANS84345.1 | VSVS12_01061 | VSVS12_00539 | Luminescence regulatory protein LuxO; Acts negatively to control the expression of luminescence. At low cell density, LuxO is phosphorylated, and together with sigma-54, causes repression of the luxCDABEGH operon. This repression could be indirect, LuxO could activate a negative regulator of luminescence. At high cell density, LuxO is dephosphorylated and inactive, therefore the luxCDABEGH operon is not repressed and light is emitted. LuxO and sigma-54 have also a role in activating the production of siderophore and in regulating the rugose colony morphology phenotype; Contains 1 respo [...] | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.805 |
| ANS84831.1 | ANS85539.1 | VSVS12_01061 | VSVS12_01772 | Luminescence regulatory protein LuxO; Acts negatively to control the expression of luminescence. At low cell density, LuxO is phosphorylated, and together with sigma-54, causes repression of the luxCDABEGH operon. This repression could be indirect, LuxO could activate a negative regulator of luminescence. At high cell density, LuxO is dephosphorylated and inactive, therefore the luxCDABEGH operon is not repressed and light is emitted. LuxO and sigma-54 have also a role in activating the production of siderophore and in regulating the rugose colony morphology phenotype; Contains 1 respo [...] | Member of the two-component regulatory system MtrA/MtrB; Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 1 response regulatory domain. | 0.903 |
| ANS85539.1 | ANS84345.1 | VSVS12_01772 | VSVS12_00539 | Member of the two-component regulatory system MtrA/MtrB; Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 1 response regulatory domain. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.806 |
| ANS85539.1 | ANS84831.1 | VSVS12_01772 | VSVS12_01061 | Member of the two-component regulatory system MtrA/MtrB; Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 1 response regulatory domain. | Luminescence regulatory protein LuxO; Acts negatively to control the expression of luminescence. At low cell density, LuxO is phosphorylated, and together with sigma-54, causes repression of the luxCDABEGH operon. This repression could be indirect, LuxO could activate a negative regulator of luminescence. At high cell density, LuxO is dephosphorylated and inactive, therefore the luxCDABEGH operon is not repressed and light is emitted. LuxO and sigma-54 have also a role in activating the production of siderophore and in regulating the rugose colony morphology phenotype; Contains 1 respo [...] | 0.903 |
| ANS86069.1 | ANS84345.1 | VSVS12_02308 | VSVS12_00539 | Required for the expression of anaerobic nitric oxide (NO) reductase, acts as a transcriptional activator for at least the norVW operon. Activation also requires sigma-54; Contains 1 sigma-54 factor interaction domain. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.812 |
| ptsN | ANS84344.1 | VSVS12_00537 | VSVS12_00538 | Protein-N(pi)-phosphohistidine--sugar phosphotransferase; Seems to have a role in regulating nitrogen assimilation; Contains 1 PTS EIIA type-2 domain; KEGG: pmr:PMI3646 PTS system, nitrogen regulatory IIA component. | Ribosome hibernation promoting factor; During stationary phase, promotes and stabilizes dimerization of 70S ribosomes, leading to the formation of inactive 100S ribosomes; Belongs to the Hpf/RaiA ribosome-associated protein family. Hpf subfamily. | 0.930 |
| ptsN | ANS84345.1 | VSVS12_00537 | VSVS12_00539 | Protein-N(pi)-phosphohistidine--sugar phosphotransferase; Seems to have a role in regulating nitrogen assimilation; Contains 1 PTS EIIA type-2 domain; KEGG: pmr:PMI3646 PTS system, nitrogen regulatory IIA component. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.834 |
| rpoA | ANS84345.1 | VSVS12_00496 | VSVS12_00539 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.878 |
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