STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltBBelongs to the glutamate synthase family; Contains 1 glutamine amidotransferase type-2 domain; KEGG: vsa:VSAL_I2562 glutamate synthase (NADPH/NADH) large chain; overlaps another CDS with the same product name. (1515 aa)    
Predicted Functional Partners:
gltD
Glutamate synthase (NADPH); Contains 1 4Fe-4S ferredoxin-type domain; KEGG: vvu:VV1_0554 glutamate synthase (NADPH/NADH) small chain; overlaps another CDS with the same product name.
 0.999
fadH
KEGG: vpa:VP2151 2,4-dienoyl-CoA reductase (NADPH2).
  
 
 0.999
fdoG
Formate dehydrogenase; Contains 4 4Fe-4S ferredoxin-type domains; KEGG: vvu:VV2_1360 formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.999
glnA
Glutamate--ammonia ligase; Belongs to the glutamine synthetase family; KEGG: sgl:SG2230 glutamine synthetase.
  
 
 0.978
carB
Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family; Contains 2 ATP-grasp domains; KEGG: hde:HDEF_0108 carbamoyl-phosphate synthase large subunit.
  
 
 0.962
glmS
Glutamine--fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.954
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
    
 0.951
putA
Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.940
glsA
Glutaminase; Belongs to the glutaminase family; KEGG: yru:BD65_1318 glutaminase.
     
 0.935
gdh2
Glutamate dehydrogenase; Involved in arginine catabolism by converting L- glutamate, into 2-oxoglutarate, which is then channeled into the tricarboxylic acid cycle. Can also utilize other amino acids of the glutamate family; Belongs to the Glu/Leu/Phe/Val dehydrogenases family; KEGG: vch:VC1492 glutamate dehydrogenase.
     
 0.935
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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