STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflKProtein QmcA; Belongs to the band 7/mec-2 family; KEGG: tde:TDE1332 membrane protease subunit HflK; Acting on peptide bonds (peptidases). (306 aa)    
Predicted Functional Partners:
ANS84727.1
Inner membrane protein YbbJ; To M. jannaschii MJ0826.
 
  
 0.930
ftsH
ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.846
hflC
Protein HflC; HflC and HflK could regulate a protease.
  
     0.710
ANS84729.1
Thioredoxin; Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. Belongs to the thioredoxin family; Contains 1 thioredoxin domain.
       0.512
ANS84730.1
Putative oxidoreductase YbbO; Belongs to the short-chain dehydrogenases/reductases (SDR) family; KEGG: ype:YPO3081 null; Oxidoreductases.
   
 
 0.435
ANS86591.1
Belongs to the UPF0301 (AlgH) family.
  
    0.405
ANS87657.1
Protease that cleaves its substrates preferentially near hydrophobic or aromatic amino acid residues; Belongs to the peptidase S14 family.
  
  
 0.405
gltB
Belongs to the glutamate synthase family; Contains 1 glutamine amidotransferase type-2 domain; KEGG: vsa:VSAL_I2562 glutamate synthase (NADPH/NADH) large chain; overlaps another CDS with the same product name.
     
 0.401
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.