STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacAKEGG: sgl:SG1887 galactose-6-phosphate isomerase. (213 aa)    
Predicted Functional Partners:
fruK
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family; KEGG: vpa:VPA0812 1-phosphofructokinase.
  
  
 0.852
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Catalyzes the reduction of 2,5-diketo-3-deoxygluconate (DKII or 4,6-dihydroxy-2,5-dioxohexanoate) into 2-keto-3- deoxygluconate (KDG or 2-dehydro-3-deoxygluconate) with a concomitant oxidation of NADH; Belongs to the short-chain dehydrogenases/reductases (SDR) family; KEGG: ype:YPO1724 2-deoxy-D-gluconate 3-dehydrogenase.
 
  
 0.718
ANS84926.1
Inner membrane protein YgjV.
 
     0.682
bglA
6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family; KEGG: lmo:lmo0319 6-phospho-beta-glucosidase.
  
  
 0.608
kdgK
2-dehydro-3-deoxygluconokinase; Catalyzes the phosphorylation of 2-keto-3-deoxygluconate (KDG) to produce 2-keto-3-deoxy-6-phosphogluconate (KDPG); Belongs to the carbohydrate kinase PfkB family; KEGG: vvy:VV0554 2-dehydro-3-deoxygluconokinase.
 
  
 0.569
ANS84923.1
Hypothetical protein.
       0.534
yteR
KEGG: hdl:HALDL1_04845 unsaturated rhamnogalacturonyl hydrolase.
     
 0.528
ANS84916.1
Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism; Contains 1 HTH deoR-type DNA-binding domain.
  
  
 0.489
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.473
ANS84919.1
Fructose permease IID component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system is involved in fructose transport. Contains 1 PTS EIID domain.
 
  
 0.455
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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