STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dinGBelongs to the helicase family. DinG subfamily; Contains 1 helicase ATP-binding domain; KEGG: vch:VC1990 ATP-dependent DNA helicase DinG. (643 aa)    
Predicted Functional Partners:
ANS85616.1
Uncharacterized protein; Contains 1 helicase ATP-binding domain; Contains 1 helicase C-terminal domain; KEGG: eco:b2184 ATP-dependent helicase IRC3; Acting on ATP; involved in cellular and subcellular movement.
   
 0.942
rpoA
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.915
rpoZ
DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.904
rpoB
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.890
ANS87028.1
DNA-directed DNA polymerase; Probable helicase involved in DNA repair and perhaps also replication; Belongs to the helicase family. DinG subfamily; Contains 1 exonuclease domain; Contains 1 helicase ATP-binding domain; Contains 1 helicase C-terminal domain; KEGG: vtu:IX91_15555 DNA polymerase III subunit epsilon.
      0.887
dpo1
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 0.817
ANS84991.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaD and Tsa; this reaction does not require ATP in vitro. TsaB seems to play an indirect role in the t(6)A biosynthesis pathway, possibly in regulating the core enzymatic function of TsaD (By similarity); Belongs to the KAE1 / TsaD family. TsaB subfamily.
  
    0.785
sbcD
Nuclease SbcCD subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
 0.762
ANS84992.1
Hypothetical protein.
       0.657
acsL
Long-chain-fatty-acid--CoA ligase; Catalyzes the esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids; Belongs to the ATP-dependent AMP-binding enzyme family; KEGG: vch:VC1985 long-chain acyl-CoA synthetase.
   
   0.577
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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