STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS85197.1Ferredoxin-1; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)    
Predicted Functional Partners:
fdoG
Formate dehydrogenase; Contains 4 4Fe-4S ferredoxin-type domains; KEGG: vvu:VV2_1360 formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.989
rnfB
Electron transport complex subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
   
 
 0.743
ANS85095.1
Uncharacterized protein; Contains 3 4Fe-4S ferredoxin-type domains.
  
 
 0.643
ANS85476.1
Hypothetical protein.
  
 
 0.614
gltB
Belongs to the glutamate synthase family; Contains 1 glutamine amidotransferase type-2 domain; KEGG: vsa:VSAL_I2562 glutamate synthase (NADPH/NADH) large chain; overlaps another CDS with the same product name.
  
  
 0.570
ANS85196.1
Uncharacterized protein.
 
     0.570
ANS86238.1
Putative ferredoxin-like protein; Contains 2 4Fe-4S ferredoxin-type domains.
  
 
 0.470
ANS87237.1
Uncharacterized protein; Contains 1 2Fe-2S ferredoxin-type domain; Contains 1 MOSC domain.
   
   0.452
napF
Ferredoxin-type protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
     
 0.438
ANS84083.1
5-(carboxyamino)imidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR); Belongs to the PurK/PurT family; Contains 1 ATP-grasp domain; KEGG: vch:VC0051 5-(carboxyamino)imidazole ribonucleotide synthase; overlaps another CDS with the same product name.
  
     0.430
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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