STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS85243.1HTH-type transcriptional activator TtdR; Positive regulator required for L-tartrate-dependent anaerobic growth on glycerol. Induces expression of the ttdA-ttdB- ygjE operon (By similarity); Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
ANS85754.1
HTH-type transcriptional regulator CzcR; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.753
ANS84873.1
Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake. Contains 1 HTH lysR-type DNA-binding domain.
  
     0.737
ANS87623.1
Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.709
ANS84249.1
Hydrogen peroxide-inducible protein activator; Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.701
ANS86823.1
Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.695
ANS87191.1
HTH-type transcriptional activator AmpR; This protein is a positive regulator of gene expression of beta-lactamase (AmpC). Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.672
ANS85923.1
Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.671
ANS87287.1
Putative HTH-type transcriptional regulator in ibpB-leuC intergenic region; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.667
ANS86223.1
Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression. Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.666
ANS86251.1
Transcriptional regulator of the esterase operon. Contains 1 HTH lysR-type DNA-binding domain.
  
     0.614
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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