STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS85262.1Regulatory protein; Transcriptional activator of the superoxide response regulon of E. coli that includes at least 10 genes such as sodA, nfo, zwf and micF. Binds the DNA sequence 5'-GCACN(7)CAA-3'. It also facilitates the subsequent binding of RNA polymerase to the micF and the nfo promoters (By similarity); Contains 1 HTH araC/xylS-type DNA-binding domain. (300 aa)    
Predicted Functional Partners:
ANS87675.1
HTH-type transcriptional activator RhaS; Activates expression of the rhaBAD and rhaT operons; Contains 2 HTH araC/xylS-type DNA-binding domains.
  
     0.709
ANS87505.1
Hypothetical protein.
  
     0.705
ANS86738.1
Thermoregulatory protein LcrF; Transcriptional activator of the thermally regulated virulent yopE gene. LcrF activity could be modulated by the interaction with an inducer molecule serving as a temperature messenger. The availability of the messenger would in turn be controlled by a temperature-responsive process serving as a cellular thermometer. Contains 1 HTH araC/xylS-type DNA-binding domain.
  
     0.687
ANS87115.1
Putative HTH-type transcriptional regulator YbfI; Contains 1 HTH araC/xylS-type DNA-binding domain.
  
     0.677
ANS87835.1
Putative HTH-type transcriptional regulator YpdC; Contains 1 HTH araC/xylS-type DNA-binding domain.
  
     0.677
ANS87138.1
ArgR could be a transcriptional activator of the dauBAR operon in response to the presence of L-Arg.
 
 
 0.655
ANS87811.1
Melibiose operon regulatory protein; Transcription activator for the expression of the melAB operon. MelR binds at two sites located upstream of the melAB transcription site (By similarity); Contains 1 HTH araC/xylS-type DNA-binding domain.
  
     0.643
ANS85621.1
Putative HTH-type transcriptional regulator YijO; Contains 1 HTH araC/xylS-type DNA-binding domain.
  
     0.594
ANS87933.1
Putative HTH-type transcriptional regulator YbfI; Contains 1 HTH araC/xylS-type DNA-binding domain.
  
     0.589
ANS87907.1
Could help in the transcriptional activator of eaeA expression in enteropathogenic E. coli. However, it seems that it is PerC which acts as an activator. Contains 1 HTH araC/xylS-type DNA-binding domain.
  
     0.569
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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