STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS85852.1UPF0721 transmembrane protein; Belongs to the UPF0721 family. (259 aa)    
Predicted Functional Partners:
ANS85853.1
Hypothetical protein.
       0.787
ANS85854.1
Uncharacterized protein.
       0.787
ycfD
50S ribosomal protein L16 3-hydroxylase; Growth-regulating oxygenase that catalyzes the hydroxylation of 50S ribosomal protein L16 on 'Arg-81'; Contains 1 JmjC domain; KEGG: sbl:Sbal_2481 50S ribosomal protein L16 3-hydroxylase.
       0.767
xthA
Exodeoxyribonuclease III; Major apurinic-apyrimidinic endonuclease of E. coli. It removes the damaged DNA at cytosines and guanines by cleaving on the 3'-side of the AP site by a beta-elimination reaction. It exhibits 3'-5'-exonuclease, 3'-phosphomonoesterase, 3'-repair diesterase and ribonuclease H activities. Belongs to the DNA repair enzymes AP/ExoA family; KEGG: eca:ECA2335 exodeoxyribonuclease III.
       0.651
dinG-2
DNA helicase; DNA-dependent ATPase and 5'-3' DNA helicase.
  
    0.602
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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