STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
torATrimethylamine-N-oxide reductase (cytochrome c); Reduces trimethylamine-N-oxide (TMAO) into trimethylamin; an anaerobic reaction coupled to energy-yielding reactions; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family; KEGG: vch:VC1692 trimethylamine-N-oxide reductase (cytochrome c). (820 aa)    
Predicted Functional Partners:
ANS85916.1
Cytochrome c-type protein NapC; Belongs to the TorC/TorY family.
 
 0.996
torD
Chaperone protein TorD; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
 
 0.990
ANS85098.1
Anaerobic dimethyl sulfoxide reductase chain; Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds. Contains 3 4Fe-4S ferredoxin-type domains.
 
 
 0.921
ANS86083.1
Polysulfide reductase chain; Component of the phosphorylative electron transport system with polysulfide as the terminal acceptor. Contains 3 4Fe-4S ferredoxin-type domains.
 
 
 0.899
ANS87637.1
Periplasmic nitrate reductase, electron transfer subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
 
 
 0.883
ANS85472.1
Formate dehydrogenase iron-sulfur subunit; This chain is an electron transfer unit containing 18 cysteine residues, 16 of which occur in four clusters. Contains 3 4Fe-4S ferredoxin-type domains.
 
 
 0.857
ANS87638.1
Cytochrome c-type protein; Mediates electron flow from quinones to the NapAB complex.
 
 
 0.823
napF
Ferredoxin-type protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
 
  
 0.818
ANS85095.1
Uncharacterized protein; Contains 3 4Fe-4S ferredoxin-type domains.
 
  
 0.791
napD
Hypothetical protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
 
 
 0.786
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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