STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rdgCRecombination-associated protein RdgC; May be involved in recombination; Belongs to the RdgC family. (304 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.686
rpoB
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.630
ANS86237.1
Putative protease; Belongs to the peptidase U32 family; KEGG: vpa:VP0567 putative protease; Acting on peptide bonds (peptidases).
 
     0.568
ANS83964.1
Involved in ubiquinone (coenzyme Q) biosynthesis under aerobic conditions; Belongs to the UbiJ family.
  
     0.550
ANS86233.1
Phosphate-binding protein PstS; Involved in the system for phosphate transport across the cytoplasmic membrane. The ability of PstS to bind phosphate may allow it to acquire phosphate from its host; Belongs to the PstS family.
       0.485
phoR
Histidine kinase; Member of the two-component regulatory system PhoR/PhoB involved in the phosphate regulon genes expression. PhoR may function as a membrane-associated protein kinase that phosphorylates PhoB in response to environmental signals. Contains 1 histidine kinase domain; Contains 1 PAS (PER-ARNT-SIM) domain; KEGG: eco:b0400 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
       0.485
ANS86238.1
Putative ferredoxin-like protein; Contains 2 4Fe-4S ferredoxin-type domains.
       0.478
ANS86235.1
This protein is a positive regulator for the phosphate regulon. Transcription of this operon is positively regulated by PhoB and PhoR when phosphate is limited (By similarity); Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 1 response regulatory domain.
       0.477
sbcB
Degrades single-stranded DNA (ssDNA) in a highly processive manner. Also functions as a DNA deoxyribophosphodiesterase that releases deoxyribose-phosphate moieties following the cleavage of DNA at an apurinic/apyrimidinic (AP) site by either an AP endonuclease or AP lyase; Contains 1 exonuclease C-terminal domain; Contains 1 exonuclease domain; KEGG: vch:VC1234 exodeoxyribonuclease I.
  
     0.450
ANS83948.1
Uncharacterized protein.
  
     0.428
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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