STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS86784.1HTH-type transcriptional regulator HdfR; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
ANS85754.1
HTH-type transcriptional regulator CzcR; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.729
ANS87623.1
Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.703
ANS86785.1
Hypothetical protein.
 
     0.694
ANS84873.1
Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake. Contains 1 HTH lysR-type DNA-binding domain.
  
     0.688
ANS85058.1
HTH-type transcriptional regulator DsdC; Regulates the expression of the dsd operon for D-serine deaminase (dsdA); Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.675
ANS87101.1
Putative HTH-type transcriptional regulator LtrA; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.646
ANS87287.1
Putative HTH-type transcriptional regulator in ibpB-leuC intergenic region; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.644
ANS86223.1
Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression. Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.611
ANS86281.1
HTH-type transcriptional activator AmpR; Regulates the expression of the beta-lactamase gene. Represses cephalosporinase (AmpC) in the presence of beta-lactams and induces it in the absence of them. Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.606
ANS87972.1
HTH-type transcriptional regulator AbgR; Could be the regulator of the abg operon. Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.606
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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