STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS86924.1Hypothetical protein. (332 aa)    
Predicted Functional Partners:
ANS86922.1
Hypothetical protein.
  
    0.789
ANS86921.1
Hypothetical protein.
       0.786
ANS86923.1
Hypothetical protein.
       0.773
ANS86925.1
Coupling protein TraD; Conjugative DNA transfer (CDT) is the unidirectional transfer of ssDNA plasmid from a donor to a recipient cell. It is the central mechanism by which antibiotic resistance and virulence factors are propagated in bacterial populations. Couples the transferosome to a type IV secretion system. Probably forms a pore through which single-stranded plasmid DNA is transferred to the secretion system. Plasmid specificity is conferred by the TraD- TraM pair (By similarity); Belongs to the TrwB coupling protein family.
       0.598
ANS86926.1
Hypothetical protein.
       0.598
ANS86927.1
Hypothetical protein.
       0.598
ANS86928.1
Hypothetical protein.
       0.598
ANS86929.1
Belongs to the myoviridae tail sheath protein family.
       0.598
ANS86930.1
Hypothetical protein.
       0.447
ANS86931.1
Hypothetical protein.
       0.447
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.