STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adiAArginine decarboxylase; ADC can be found in two forms: biodegradative and biosynthetic. The biodegradative form may play a role in regulating pH by consuming proteins. Belongs to the Orn/Lys/Arg decarboxylase class-I family; KEGG: xdo:XDD1_2275 arginine decarboxylase. (763 aa)    
Predicted Functional Partners:
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
     
 0.915
rocF
Arginase; Belongs to the arginase family; KEGG: vfu:vfu_B00012 arginase.
    
 0.914
speB
Agmatinase; Catalyzes the formation of putrescine from agmatine; Belongs to the arginase family. Agmatinase subfamily; KEGG: vch:VCA0814 agmatinase.
    
 0.914
astA
Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine; Belongs to the arginine N-succinyltransferase family; KEGG: vvu:VV1_1314 arginine N-succinyltransferase.
   
 
  0.907
argH
In the N-terminal sectio; belongs to the lyase 1 family. Argininosuccinate lyase subfamily; In the C-terminal sectio; belongs to the acetyltransferase family. ArgA subfamily; Contains 1 N-acetyltransferase domain; KEGG: eco:b3960 argininosuccinate lyase.
     
 0.868
arcA
Belongs to the arginine deiminase family; KEGG: vch:VC0423 arginine deiminase.
    
 0.839
potE
Arginine/agmatine antiporter; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family.
 
  
 0.767
moxR
Functions as an ATPase. May play a role in metal insertion (metal-chelatase) or as a chaperone; Belongs to the RavA family; KEGG: vcy:IX92_21485 MoxR-like ATPase; Acting on acid anhydrides; catalyzing transmembrane movement of substances.
   
 
 0.756
ANS87847.1
Protein MoxR; May be involved in the regulation of formation of active methanol dehydrogenase. Belongs to the MoxR family; KEGG: tao:THIAE_02665 MoxR-like ATPase; Acting on acid anhydrides; catalyzing transmembrane movement of substances.
   
 
 0.681
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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