STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS87138.1ArgR could be a transcriptional activator of the dauBAR operon in response to the presence of L-Arg. (312 aa)    
Predicted Functional Partners:
ANS87139.1
Hypothetical protein.
 
    0.804
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.748
ANS83913.1
Putative HTH-type transcriptional regulator YbfI; Contains 1 HTH araC/xylS-type DNA-binding domain.
 
 
 0.672
ANS85262.1
Regulatory protein; Transcriptional activator of the superoxide response regulon of E. coli that includes at least 10 genes such as sodA, nfo, zwf and micF. Binds the DNA sequence 5'-GCACN(7)CAA-3'. It also facilitates the subsequent binding of RNA polymerase to the micF and the nfo promoters (By similarity); Contains 1 HTH araC/xylS-type DNA-binding domain.
 
 
 0.655
ANS87115.1
Putative HTH-type transcriptional regulator YbfI; Contains 1 HTH araC/xylS-type DNA-binding domain.
 
 
 0.608
ANS86782.1
DNA-3-methyladenine glycosylase II; Is involved in the adaptive response to alkylation damage in DNA caused by alkylating agents. Repairs the Sp diastereomer of DNA methylphosphotriester lesions by a direct and irreversible transfer of the methyl group to one of its own cysteine residues. Also catalyzes the hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, 3- methylguanine, 7-methylguanine, O2-methylthymine, and O2- methylcytosine from the damaged DNA polymer formed by alkylation lesions (By similarity); The methylation of Alka by methylphosphotriesters in DNA [...]
  
  
 0.565
ANS87675.1
HTH-type transcriptional activator RhaS; Activates expression of the rhaBAD and rhaT operons; Contains 2 HTH araC/xylS-type DNA-binding domains.
 
 
 0.553
ANS87505.1
Hypothetical protein.
 
 
 0.546
ANS86435.1
Protein PhnB.
 
    0.543
ANS87839.1
Putative HTH-type transcriptional regulator YtdP; Contains 1 HTH araC/xylS-type DNA-binding domain.
 
 
 0.508
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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