Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ANS84206.1 | glcD | VSVS12_00389 | VSVS12_01574 | 1,5-anhydro-D-fructose reductase; Catalyzes the NADPH-specific reduction of 1,5-anhydro-D- fructose to 1,5-anhydro-D-mannitol. Also shows some activity against structurally related compounds such as 3-keto-1,5-anhydro- D-fructose, D-glucosone and D-xylosone. The enzyme cannot use NADH as cosubstrate. Belongs to the Gfo/Idh/MocA family; KEGG: sat:SYN_02682 null; With NAD(+) or NADP(+) as acceptor. | (S)-2-hydroxy-acid oxidase; Contains 1 4Fe-4S ferredoxin-type domain; Contains 1 FAD-binding PCMH-type domain; To E. coli YdiJ; To mammalian alkyldihydroxyacetonephosphate synthases, to yeast AIP2 and DLD1 and to E. coli YgcU; KEGG: gau:GAU_0600 glycolate oxidase. | 0.658 |
| ANS84206.1 | lra3 | VSVS12_00389 | VSVS12_03474 | 1,5-anhydro-D-fructose reductase; Catalyzes the NADPH-specific reduction of 1,5-anhydro-D- fructose to 1,5-anhydro-D-mannitol. Also shows some activity against structurally related compounds such as 3-keto-1,5-anhydro- D-fructose, D-glucosone and D-xylosone. The enzyme cannot use NADH as cosubstrate. Belongs to the Gfo/Idh/MocA family; KEGG: sat:SYN_02682 null; With NAD(+) or NADP(+) as acceptor. | L-rhamnonate dehydratase; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A. tumefaciens to utilize D- galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D-glucaro-6,3-lactone and linear D-glucarate; Belongs to the mandelate racemase/muconate lactonizing enzyme family; KEGG: ant:Arnit_0012 L-rhamnonate dehydratase. | 0.476 |
| ANS85112.1 | ANS87237.1 | VSVS12_01345 | VSVS12_03528 | Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily; In the C-terminal sectio; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family; Contains 1 FAD-binding FR-type domain; KEGG: vpa:VP1188 NADH oxidoreductase Hcr; Oxidoredu [...] | Uncharacterized protein; Contains 1 2Fe-2S ferredoxin-type domain; Contains 1 MOSC domain. | 0.455 |
| ANS85112.1 | glcD | VSVS12_01345 | VSVS12_01574 | Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily; In the C-terminal sectio; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family; Contains 1 FAD-binding FR-type domain; KEGG: vpa:VP1188 NADH oxidoreductase Hcr; Oxidoredu [...] | (S)-2-hydroxy-acid oxidase; Contains 1 4Fe-4S ferredoxin-type domain; Contains 1 FAD-binding PCMH-type domain; To E. coli YdiJ; To mammalian alkyldihydroxyacetonephosphate synthases, to yeast AIP2 and DLD1 and to E. coli YgcU; KEGG: gau:GAU_0600 glycolate oxidase. | 0.417 |
| ANS85112.1 | lra3 | VSVS12_01345 | VSVS12_03474 | Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily; In the C-terminal sectio; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family; Contains 1 FAD-binding FR-type domain; KEGG: vpa:VP1188 NADH oxidoreductase Hcr; Oxidoredu [...] | L-rhamnonate dehydratase; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A. tumefaciens to utilize D- galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D-glucaro-6,3-lactone and linear D-glucarate; Belongs to the mandelate racemase/muconate lactonizing enzyme family; KEGG: ant:Arnit_0012 L-rhamnonate dehydratase. | 0.417 |
| ANS87180.1 | ANS87181.1 | VSVS12_03471 | VSVS12_03472 | KEGG: spl:Spea_3856 altronate dehydratase small subunit; overlaps another CDS with the same product name. | Catalyzes the dehydration of D-altronate; Belongs to the UxaA family; KEGG: shl:Shal_0412 altronate dehydratase large subunit; overlaps another CDS with the same product name. | 0.993 |
| ANS87180.1 | ANS87182.1 | VSVS12_03471 | VSVS12_03473 | KEGG: spl:Spea_3856 altronate dehydratase small subunit; overlaps another CDS with the same product name. | Hypothetical protein. | 0.516 |
| ANS87180.1 | lra3 | VSVS12_03471 | VSVS12_03474 | KEGG: spl:Spea_3856 altronate dehydratase small subunit; overlaps another CDS with the same product name. | L-rhamnonate dehydratase; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A. tumefaciens to utilize D- galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D-glucaro-6,3-lactone and linear D-glucarate; Belongs to the mandelate racemase/muconate lactonizing enzyme family; KEGG: ant:Arnit_0012 L-rhamnonate dehydratase. | 0.617 |
| ANS87181.1 | ANS87180.1 | VSVS12_03472 | VSVS12_03471 | Catalyzes the dehydration of D-altronate; Belongs to the UxaA family; KEGG: shl:Shal_0412 altronate dehydratase large subunit; overlaps another CDS with the same product name. | KEGG: spl:Spea_3856 altronate dehydratase small subunit; overlaps another CDS with the same product name. | 0.993 |
| ANS87181.1 | ANS87182.1 | VSVS12_03472 | VSVS12_03473 | Catalyzes the dehydration of D-altronate; Belongs to the UxaA family; KEGG: shl:Shal_0412 altronate dehydratase large subunit; overlaps another CDS with the same product name. | Hypothetical protein. | 0.513 |
| ANS87181.1 | lra3 | VSVS12_03472 | VSVS12_03474 | Catalyzes the dehydration of D-altronate; Belongs to the UxaA family; KEGG: shl:Shal_0412 altronate dehydratase large subunit; overlaps another CDS with the same product name. | L-rhamnonate dehydratase; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A. tumefaciens to utilize D- galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D-glucaro-6,3-lactone and linear D-glucarate; Belongs to the mandelate racemase/muconate lactonizing enzyme family; KEGG: ant:Arnit_0012 L-rhamnonate dehydratase. | 0.816 |
| ANS87182.1 | ANS87180.1 | VSVS12_03473 | VSVS12_03471 | Hypothetical protein. | KEGG: spl:Spea_3856 altronate dehydratase small subunit; overlaps another CDS with the same product name. | 0.516 |
| ANS87182.1 | ANS87181.1 | VSVS12_03473 | VSVS12_03472 | Hypothetical protein. | Catalyzes the dehydration of D-altronate; Belongs to the UxaA family; KEGG: shl:Shal_0412 altronate dehydratase large subunit; overlaps another CDS with the same product name. | 0.513 |
| ANS87182.1 | lra3 | VSVS12_03473 | VSVS12_03474 | Hypothetical protein. | L-rhamnonate dehydratase; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A. tumefaciens to utilize D- galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D-glucaro-6,3-lactone and linear D-glucarate; Belongs to the mandelate racemase/muconate lactonizing enzyme family; KEGG: ant:Arnit_0012 L-rhamnonate dehydratase. | 0.512 |
| ANS87237.1 | ANS85112.1 | VSVS12_03528 | VSVS12_01345 | Uncharacterized protein; Contains 1 2Fe-2S ferredoxin-type domain; Contains 1 MOSC domain. | Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily; In the C-terminal sectio; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family; Contains 1 FAD-binding FR-type domain; KEGG: vpa:VP1188 NADH oxidoreductase Hcr; Oxidoredu [...] | 0.455 |
| ANS87237.1 | glcD | VSVS12_03528 | VSVS12_01574 | Uncharacterized protein; Contains 1 2Fe-2S ferredoxin-type domain; Contains 1 MOSC domain. | (S)-2-hydroxy-acid oxidase; Contains 1 4Fe-4S ferredoxin-type domain; Contains 1 FAD-binding PCMH-type domain; To E. coli YdiJ; To mammalian alkyldihydroxyacetonephosphate synthases, to yeast AIP2 and DLD1 and to E. coli YgcU; KEGG: gau:GAU_0600 glycolate oxidase. | 0.456 |
| ANS87237.1 | lra3 | VSVS12_03528 | VSVS12_03474 | Uncharacterized protein; Contains 1 2Fe-2S ferredoxin-type domain; Contains 1 MOSC domain. | L-rhamnonate dehydratase; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A. tumefaciens to utilize D- galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D-glucaro-6,3-lactone and linear D-glucarate; Belongs to the mandelate racemase/muconate lactonizing enzyme family; KEGG: ant:Arnit_0012 L-rhamnonate dehydratase. | 0.434 |
| aslA | lra3 | VSVS12_03950 | VSVS12_03474 | Displays arylsulfatase activity with pseudosubstrates at acidic pH, such as p-nitrocatechol sulfate; Belongs to the sulfatase family; KEGG: shd:SUTH_00506 arylsulfatase. | L-rhamnonate dehydratase; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A. tumefaciens to utilize D- galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D-glucaro-6,3-lactone and linear D-glucarate; Belongs to the mandelate racemase/muconate lactonizing enzyme family; KEGG: ant:Arnit_0012 L-rhamnonate dehydratase. | 0.495 |
| dnaB | lra3 | VSVS12_02882 | VSVS12_03474 | DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | L-rhamnonate dehydratase; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A. tumefaciens to utilize D- galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D-glucaro-6,3-lactone and linear D-glucarate; Belongs to the mandelate racemase/muconate lactonizing enzyme family; KEGG: ant:Arnit_0012 L-rhamnonate dehydratase. | 0.431 |
| glcD | ANS84206.1 | VSVS12_01574 | VSVS12_00389 | (S)-2-hydroxy-acid oxidase; Contains 1 4Fe-4S ferredoxin-type domain; Contains 1 FAD-binding PCMH-type domain; To E. coli YdiJ; To mammalian alkyldihydroxyacetonephosphate synthases, to yeast AIP2 and DLD1 and to E. coli YgcU; KEGG: gau:GAU_0600 glycolate oxidase. | 1,5-anhydro-D-fructose reductase; Catalyzes the NADPH-specific reduction of 1,5-anhydro-D- fructose to 1,5-anhydro-D-mannitol. Also shows some activity against structurally related compounds such as 3-keto-1,5-anhydro- D-fructose, D-glucosone and D-xylosone. The enzyme cannot use NADH as cosubstrate. Belongs to the Gfo/Idh/MocA family; KEGG: sat:SYN_02682 null; With NAD(+) or NADP(+) as acceptor. | 0.658 |
page 1 of 2