STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS87188.1HTH-type transcriptional regulator NimR; Negatively regulates expression of the nimT operon and its own expression. Acts by binding to the nimR-nimT intergenic region; Contains 1 HTH araC/xylS-type DNA-binding domain. (265 aa)    
Predicted Functional Partners:
ANS87189.1
Multidrug resistance pump that participates in a low energy shock adaptive response. Belongs to the major facilitator superfamily.
 
     0.686
ANS87187.1
Hypothetical protein.
       0.623
ANS87933.1
Putative HTH-type transcriptional regulator YbfI; Contains 1 HTH araC/xylS-type DNA-binding domain.
  
     0.539
ANS85265.1
Ornithine utilization regulator; Probably activates the ArgJ gene that encodes ornithine acetyltransferase. Binds to its own promoter-operator region. Probably binds ornithine. Contains 1 HTH araC/xylS-type DNA-binding domain.
  
   
 0.508
ANS88029.1
Hypothetical protein.
  
   
 0.464
ANS83913.1
Putative HTH-type transcriptional regulator YbfI; Contains 1 HTH araC/xylS-type DNA-binding domain.
  
     0.437
ANS85579.1
HTH-type transcriptional regulator YidZ; Involved in anaerobic NO protection; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
    0.416
ANS84320.1
Hypothetical protein.
  
    0.402
Your Current Organism:
Vibrio scophthalmi
NCBI taxonomy Id: 45658
Other names: CAIM 75, CECT 4638, CIP 105211, LMG 19158, LMG:19158, V. scophthalmi, strain A089
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