STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC62_11185SAP domain-containing protein. (300 aa)    
Predicted Functional Partners:
ALC62_07720
Regulator of nonsense transcripts 1.
    
 
 0.684
ALC62_07658
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.678
ALC62_02291
Chromatin-remodeling complex ATPase chain Iswi.
   
 0.674
ALC62_03658
Splicing factor 3B subunit 1.
   
 
 0.659
ALC62_09265
Myb-binding protein 1A.
     
 0.646
ALC62_14118
Transcription factor AP-2-epsilon.
    
 0.639
ALC62_11210
DNA excision repair protein ERCC-6.
    
 0.637
ALC62_07236
Lymphocyte-specific helicase.
   
  0.634
ALC62_03063
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.615
ALC62_15310
Histone H2A; Belongs to the histone H2A family.
   
 
  0.613
Your Current Organism:
Cyphomyrmex costatus
NCBI taxonomy Id: 456900
Other names: C. costatus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.