STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC62_01830Homeobox protein TGIF1. (458 aa)    
Predicted Functional Partners:
ALC62_14765
Homeobox protein extradenticle.
    
 0.781
ALC62_14277
Homeobox protein extradenticle.
    
 0.781
ALC62_15116
Protein tiptop.
    
 0.611
ALC62_03187
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.593
ALC62_11889
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.593
ALC62_05926
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.593
ALC62_11173
Homeobox protein abdominal-B.
    
 
 0.517
ALC62_04857
Serum response factor like protein.
   
 
 0.505
ALC62_12289
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.471
ALC62_12811
Mothers against decapentaplegic homolog.
    
  0.467
Your Current Organism:
Cyphomyrmex costatus
NCBI taxonomy Id: 456900
Other names: C. costatus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.