STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC62_14898Zinc finger CCCH domain-containing protein 13. (1388 aa)    
Predicted Functional Partners:
ALC62_14129
Pre-mRNA-splicing regulator female-lethal(2)D.
    
 
 0.992
ALC62_01341
THO complex subunit 3.
    
 0.984
ALC62_04075
THO complex subunit 1.
   
 0.984
ALC62_06554
THO complex subunit 5 like protein.
   
 0.978
ALC62_04686
ATP-dependent RNA helicase WM6.
   
 0.978
ALC62_11297
THO complex subunit 6 like protein.
    
 0.975
ALC62_06630
Protein virilizer.
   
 
 0.971
ALC62_04889
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16.
   
 0.969
ALC62_06994
Cell division cycle 5-related protein.
   
 
 0.944
MED4
Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
   0.943
Your Current Organism:
Cyphomyrmex costatus
NCBI taxonomy Id: 456900
Other names: C. costatus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.