STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIUR3_06446Protein DCL, chloroplastic. (134 aa)    
Predicted Functional Partners:
TRIUR3_19767
Endoribonuclease Dicer-like protein 1; Belongs to the helicase family. Dicer subfamily.
      
 0.509
TRIUR3_01236
Endoribonuclease Dicer-like protein 3a; Belongs to the helicase family. Dicer subfamily.
      
 0.505
TRIUR3_22256
Uncharacterized protein.
      
 0.489
TRIUR3_32946
Double-stranded RNA-binding protein 1.
      
 0.478
TRIUR3_10627
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.420
TRIUR3_23220
Protein argonaute 2.
      
 0.418
TRIUR3_32925
Double-stranded RNA-binding protein 6.
      
 0.414
TRIUR3_05836
Endoribonuclease Dicer-like protein 2b.
      
 0.414
TRIUR3_05835
Endoribonuclease Dicer-like protein 2a.
      
 0.414
TRIUR3_05834
Endoribonuclease Dicer-like protein 2a.
      
 0.414
Your Current Organism:
Triticum urartu
NCBI taxonomy Id: 4572
Other names: T. urartu, Triticum urartu Tumanian ex Gandilyan
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