STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIUR3_25085RRM domain-containing protein. (196 aa)    
Predicted Functional Partners:
TRIUR3_20153
Nuclear cap-binding protein subunit 1.
    
 0.906
TRIUR3_13118
Nuclear cap-binding protein subunit 2.
    
 0.881
TRIUR3_26641
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.879
TRIUR3_13506
Serine/arginine-rich splicing factor 2.
    
 0.857
TRIUR3_27638
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.851
TRIUR3_23920
RNA-binding protein 40.
    
 0.819
TRIUR3_35110
RNA-binding protein 40.
    
 0.819
TRIUR3_16212
U2 small nuclear ribonucleoprotein B.
    
 0.819
TRIUR3_19966
U1 small nuclear ribonucleoprotein A.
    
 0.819
TRIUR3_22688
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.804
Your Current Organism:
Triticum urartu
NCBI taxonomy Id: 4572
Other names: T. urartu, Triticum urartu Tumanian ex Gandilyan
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.