T1LLI9_TRIUA protein (Triticum urartu) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1LLI9_TRIUA

Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (374 aa)

Predicted Functional Partners:

TRIUR3_25058

0.797

T1LLH6_TRIUA

0.613

TRIUR3_23201

0.585

TRIUR3_21843

0.585

TRIUR3_31264

0.585

TRIUR3_21842

0.585

TRIUR3_19436

0.554

TRIUR3_09986

0.527

T1LCR1_TRIUA

0.527

T1MAN5_TRIUA

0.519

Your Current Organism:

Triticum urartu

NCBI taxonomy Id: 4572
Other names: T. urartu, Triticum urartu Tumanian ex Gandilyan

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1LCR1_TRIUA	T1LLI9_TRIUA	T1LCR1	T1LLI9	Fe2OG dioxygenase domain-containing protein.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.527
T1LCR1_TRIUA	TRIUR3_19436	T1LCR1	M7ZCI2	Fe2OG dioxygenase domain-containing protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.554
T1LCR1_TRIUA	TRIUR3_21842	T1LCR1	M8A696	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.585
T1LCR1_TRIUA	TRIUR3_21843	T1LCR1	M7ZUB2	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.585
T1LCR1_TRIUA	TRIUR3_23201	T1LCR1	M7YL61	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.585
T1LCR1_TRIUA	TRIUR3_25058	T1LCR1	M7ZVF9	Fe2OG dioxygenase domain-containing protein.	Acyl-CoA synthetase family member 4.	0.797
T1LCR1_TRIUA	TRIUR3_31264	T1LCR1	M8A4W2	Fe2OG dioxygenase domain-containing protein.	ATG13 domain-containing protein.	0.585
T1LLH6_TRIUA	T1LLI9_TRIUA	T1LLH6	T1LLI9	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.613
T1LLI9_TRIUA	T1LCR1_TRIUA	T1LLI9	T1LCR1	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Fe2OG dioxygenase domain-containing protein.	0.527
T1LLI9_TRIUA	T1LLH6_TRIUA	T1LLI9	T1LLH6	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Uncharacterized protein.	0.613
T1LLI9_TRIUA	T1MAN5_TRIUA	T1LLI9	T1MAN5	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Uncharacterized protein.	0.519
T1LLI9_TRIUA	TRIUR3_09986	T1LLI9	M8AKK4	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Gibberellin 3-beta-dioxygenase 1; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.527
T1LLI9_TRIUA	TRIUR3_19436	T1LLI9	M7ZCI2	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.554
T1LLI9_TRIUA	TRIUR3_21842	T1LLI9	M8A696	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Uncharacterized protein.	0.585
T1LLI9_TRIUA	TRIUR3_21843	T1LLI9	M7ZUB2	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Uncharacterized protein.	0.585
T1LLI9_TRIUA	TRIUR3_23201	T1LLI9	M7YL61	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Uncharacterized protein.	0.585
T1LLI9_TRIUA	TRIUR3_25058	T1LLI9	M7ZVF9	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Acyl-CoA synthetase family member 4.	0.797
T1LLI9_TRIUA	TRIUR3_31264	T1LLI9	M8A4W2	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	ATG13 domain-containing protein.	0.585
T1MAN5_TRIUA	T1LLI9_TRIUA	T1MAN5	T1LLI9	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.519
T1MAN5_TRIUA	TRIUR3_09986	T1MAN5	M8AKK4	Uncharacterized protein.	Gibberellin 3-beta-dioxygenase 1; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.493