T1N8D1_TRIUA protein (Triticum urartu) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1N8D1_TRIUA

Uncharacterized protein. (237 aa)

Predicted Functional Partners:

TRIUR3_03914

0.992

TRIUR3_11631

0.982

TRIUR3_32586

0.981

TRIUR3_23621

0.981

TRIUR3_17508

0.975

T1MVD8_TRIUA

0.947

TRIUR3_27693

0.946

TRIUR3_00763

0.946

TRIUR3_29154

0.946

TRIUR3_01391

0.946

Your Current Organism:

Triticum urartu

NCBI taxonomy Id: 4572
Other names: T. urartu, Triticum urartu Tumanian ex Gandilyan

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1MVD8_TRIUA	T1N8D1_TRIUA	T1MVD8	T1N8D1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.947
T1MVD8_TRIUA	TRIUR3_00763	T1MVD8	M7Z1M6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal_L7Ae domain-containing protein.	0.494
T1MVD8_TRIUA	TRIUR3_01391	T1MVD8	M7ZCE8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.494
T1MVD8_TRIUA	TRIUR3_03914	T1MVD8	M8ACU7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal_L7Ae domain-containing protein.	0.904
T1MVD8_TRIUA	TRIUR3_11631	T1MVD8	M7Z133	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.929
T1MVD8_TRIUA	TRIUR3_17508	T1MVD8	M7YJB9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.428
T1MVD8_TRIUA	TRIUR3_23621	T1MVD8	M7ZEJ6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.869
T1MVD8_TRIUA	TRIUR3_27693	T1MVD8	M7Z072	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.494
T1MVD8_TRIUA	TRIUR3_29154	T1MVD8	M7Z930	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	60S ribosomal protein L7a.	0.494
T1MVD8_TRIUA	TRIUR3_32586	T1MVD8	M7YWX8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.869
T1N8D1_TRIUA	T1MVD8_TRIUA	T1N8D1	T1MVD8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.947
T1N8D1_TRIUA	TRIUR3_00763	T1N8D1	M7Z1M6	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.946
T1N8D1_TRIUA	TRIUR3_01391	T1N8D1	M7ZCE8	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.946
T1N8D1_TRIUA	TRIUR3_03914	T1N8D1	M8ACU7	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.992
T1N8D1_TRIUA	TRIUR3_11631	T1N8D1	M7Z133	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.982
T1N8D1_TRIUA	TRIUR3_17508	T1N8D1	M7YJB9	Uncharacterized protein.	Uncharacterized protein.	0.975
T1N8D1_TRIUA	TRIUR3_23621	T1N8D1	M7ZEJ6	Uncharacterized protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.981
T1N8D1_TRIUA	TRIUR3_27693	T1N8D1	M7Z072	Uncharacterized protein.	Uncharacterized protein.	0.946
T1N8D1_TRIUA	TRIUR3_29154	T1N8D1	M7Z930	Uncharacterized protein.	60S ribosomal protein L7a.	0.946
T1N8D1_TRIUA	TRIUR3_32586	T1N8D1	M7YWX8	Uncharacterized protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.981