Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_00514Ger(X)C family germination protein. (372 aa)    
Predicted Functional Partners:
CSBG_00513
Hypothetical protein.
 
  
 0.964
CSBG_00512
Spore germination protein (amino acid permease).
 
  
 0.917
CSBG_02294
Hypothetical protein.
 
  
 0.703
CSBG_02984
Hypothetical protein.
  
     0.659
CSBG_00819
Hypothetical protein.
  
     0.655
CSBG_03502
Hypothetical protein.
  
     0.630
CSBG_01546
Hypothetical protein.
  
     0.629
CSBG_01547
Hypothetical protein.
  
     0.629
CSBG_02377
Hypothetical protein.
  
     0.586
CSBG_02296
Stage V sporulation protein AD.
  
  
 0.548
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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