Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_00697DNA repair protein RadC. (152 aa)    
Predicted Functional Partners:
CSBG_00698
Hypothetical protein.
       0.781
CSBG_00699
Hypothetical protein.
       0.723
CSBG_02807
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
  
 0.715
CSBG_00700
Hypothetical protein.
       0.676
CSBG_02804
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
  
 0.649
CSBG_02845
comF family protein.
 
    0.582
CSBG_01779
DNA protecting protein DprA.
  
  
 0.535
CSBG_02053
Diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.517
CSBG_02689
RluA family pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.499
CSBG_00696
Hypothetical protein.
       0.490
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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