Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_00931Hypothetical protein. (396 aa)    
Predicted Functional Partners:
CSBG_00930
Hypothetical protein.
       0.788
cmk
Cytidylate kinase.
  
  
 0.623
CSBG_01164
Exodeoxyribonuclease III (xth).
  
    0.612
CSBG_00929
Hypothetical protein.
       0.609
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.593
CSBG_00932
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
    0.576
CSBG_00933
Pyruvate/2-ketoisovalerate family 2-oxoacid:acceptor oxidoreductase, beta subunit.
       0.568
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.519
CSBG_02124
Hydrogenase maturation GTPase HydF.
  
  
 0.519
CSBG_00928
Hypothetical protein.
       0.450
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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