Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_01099TrkH family potassium uptake protein. (430 aa)    
Predicted Functional Partners:
CSBG_03444
Hypothetical protein.
 
 
 0.980
CSBG_01240
Hypothetical protein.
 
 
 0.914
CSBG_02166
Hypothetical protein.
  
 
 0.645
CSBG_02414
Hypothetical protein.
  
 
 0.635
CSBG_00789
Hypothetical protein.
  
 
 0.570
CSBG_00139
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
   
   0.506
CSBG_02031
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
   
   0.506
CSBG_01098
YebC/PmpR family DNA-binding regulatory protein.
       0.416
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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