Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_01698PTS system, mannose/fructose/sorbose family, IIA component. (166 aa)    
Predicted Functional Partners:
CSBG_00258
PTS system, mannose/fructose/sorbose family, IID component.
 
 0.971
CSBG_00195
PTS system, mannose/fructose/sorbose family, IID component.
 
 0.960
CSBG_03066
Hypothetical protein.
 
 0.960
CSBG_00429
Hypothetical protein.
 
 0.959
CSBG_00196
Hypothetical protein.
 
 0.957
CSBG_03065
Hypothetical protein.
 
 0.957
CSBG_00257
PTS system, mannose/fructose/sorbose family, IIC component.
 
 0.956
CSBG_03064
Hypothetical protein.
 
 
 0.952
CSBG_00428
Hypothetical protein.
 
 0.950
CSBG_03199
PTS system, Fru family, IIC component.
  
 
 0.946
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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