Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_01901Hypothetical protein. (226 aa)    
Predicted Functional Partners:
CSBG_01902
Hypothetical protein.
 
 0.998
CSBG_01590
Hypothetical protein.
 0.971
CSBG_00350
Hypothetical protein.
 
 0.969
CSBG_01172
Hypothetical protein.
  
 0.935
CSBG_00793
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.896
CSBG_02015
Flagellar motor switch protein FliN.
  
 
 0.894
CSBG_00307
Hypothetical protein.
    
 0.851
CSBG_00515
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.832
CSBG_01015
Hypothetical protein.
  
 0.815
CSBG_02970
PAS domain S-box protein.
  
 0.815
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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