CSBG_01910 protein (Clostridium sp. 7243FAA)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSBG_01910

Radical SAM additional 4Fe4S-binding domain-containing protein. (291 aa)

Predicted Functional Partners:

CSBG_01909

0.765

CSBG_00092

0.750

CSBG_01705

0.714

CSBG_01908

0.554

CSBG_02375

0.543

CSBG_00515

0.538

CSBG_00557

0.535

moaC

0.530

CSBG_01911

0.529

CSBG_01907

0.525

Your Current Organism:

Clostridium sp. 7243FAA

NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSBG_00092	CSBG_00515	CSBG_00092	CSBG_00515	Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.799
CSBG_00092	CSBG_00557	CSBG_00092	CSBG_00557	Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Hypothetical protein.	0.480
CSBG_00092	CSBG_01910	CSBG_00092	CSBG_01910	Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Radical SAM additional 4Fe4S-binding domain-containing protein.	0.750
CSBG_00515	CSBG_00092	CSBG_00515	CSBG_00092	Diguanylate cyclase (GGDEF) domain-containing protein.	Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.799
CSBG_00515	CSBG_00557	CSBG_00515	CSBG_00557	Diguanylate cyclase (GGDEF) domain-containing protein.	Hypothetical protein.	0.850
CSBG_00515	CSBG_01705	CSBG_00515	CSBG_01705	Diguanylate cyclase (GGDEF) domain-containing protein.	Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.	0.460
CSBG_00515	CSBG_01910	CSBG_00515	CSBG_01910	Diguanylate cyclase (GGDEF) domain-containing protein.	Radical SAM additional 4Fe4S-binding domain-containing protein.	0.538
CSBG_00557	CSBG_00092	CSBG_00557	CSBG_00092	Hypothetical protein.	Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.480
CSBG_00557	CSBG_00515	CSBG_00557	CSBG_00515	Hypothetical protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.850
CSBG_00557	CSBG_01910	CSBG_00557	CSBG_01910	Hypothetical protein.	Radical SAM additional 4Fe4S-binding domain-containing protein.	0.535
CSBG_00557	moaC	CSBG_00557	CSBG_01201	Hypothetical protein.	Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.	0.559
CSBG_01705	CSBG_00515	CSBG_01705	CSBG_00515	Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.460
CSBG_01705	CSBG_01910	CSBG_01705	CSBG_01910	Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.	Radical SAM additional 4Fe4S-binding domain-containing protein.	0.714
CSBG_01907	CSBG_01908	CSBG_01907	CSBG_01908	Hypothetical protein.	Hypothetical protein.	0.950
CSBG_01907	CSBG_01909	CSBG_01907	CSBG_01909	Hypothetical protein.	Hypothetical protein.	0.568
CSBG_01907	CSBG_01910	CSBG_01907	CSBG_01910	Hypothetical protein.	Radical SAM additional 4Fe4S-binding domain-containing protein.	0.525
CSBG_01908	CSBG_01907	CSBG_01908	CSBG_01907	Hypothetical protein.	Hypothetical protein.	0.950
CSBG_01908	CSBG_01909	CSBG_01908	CSBG_01909	Hypothetical protein.	Hypothetical protein.	0.568
CSBG_01908	CSBG_01910	CSBG_01908	CSBG_01910	Hypothetical protein.	Radical SAM additional 4Fe4S-binding domain-containing protein.	0.554
CSBG_01908	CSBG_01911	CSBG_01908	CSBG_01911	Hypothetical protein.	Hypothetical protein.	0.421