Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_02178YhgE/Pip domain-containing protein. (715 aa)    
Predicted Functional Partners:
CSBG_00356
Hypothetical protein.
  
  
  0.797
CSBG_02179
YhgE/Pip domain-containing protein.
 
    
0.779
CSBG_02046
Hypothetical protein.
    
  0.697
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
     
  0.692
CSBG_01836
Phosphate binding protein.
     
 0.690
CSBG_00385
Hypothetical protein.
     
  0.680
CSBG_02249
Hypothetical protein.
     
 0.663
CSBG_03431
Hypothetical protein.
     
 0.663
CSBG_01587
Hypothetical protein.
  
 
  0.662
CSBG_01611
Hypothetical protein.
  
 
  0.662
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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