Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_02205Hypothetical protein. (223 aa)    
Predicted Functional Partners:
CSBG_02204
Hypothetical protein.
 
 0.977
CSBG_02171
Hypothetical protein.
 
 0.913
CSBG_01710
Hypothetical protein.
 
 0.912
CSBG_03239
Hypothetical protein.
 
 0.911
CSBG_01015
Hypothetical protein.
 
 0.876
CSBG_02944
Hypothetical protein.
 
 0.867
CSBG_01172
Hypothetical protein.
 
 0.863
CSBG_02970
PAS domain S-box protein.
 
 0.854
CSBG_00350
Hypothetical protein.
 
 0.851
CSBG_01016
Hypothetical protein.
 
 0.843
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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