Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_02291Cof-like hydrolase. (295 aa)    
Predicted Functional Partners:
CSBG_00353
Cof-like hydrolase.
  
     0.742
CSBG_00729
Cof-like hydrolase.
  
 
  0.638
CSBG_00579
Hypothetical protein.
   
 
  0.582
CSBG_00731
PTS system, glucose-like IIB component.
    
 0.571
CSBG_00803
PTS system, beta-glucoside-specific IIABC component.
    
 0.571
CSBG_01464
PTS system, beta-glucoside-specific IIABC component.
    
 0.571
CSBG_02275
PTS system, sucrose-specific IIBC component.
    
 0.571
CSBG_02610
PTS system, glucose-like IIB component.
    
 0.571
CSBG_02830
PTS system, glucose-specific IIBC component.
    
 0.571
CSBG_02290
HAD hydrolase, family IA.
  
 
 0.498
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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