CSBG_02406 protein (Clostridium sp. 7243FAA)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSBG_02406

HAD hydrolase, family IA. (210 aa)

Predicted Functional Partners:

CSBG_01972

0.939

CSBG_02405

0.925

lgt

0.924

atpG

0.891

atpD-2

0.890

atpH

0.887

atpF-2

0.883

atpB-2

0.872

atpA-2

0.871

atpC

0.868

Your Current Organism:

Clostridium sp. 7243FAA

NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSBG_01972	CSBG_02406	CSBG_01972	CSBG_02406	Hypothetical protein.	HAD hydrolase, family IA.	0.939
CSBG_01972	atpA-2	CSBG_01972	CSBG_02861	Hypothetical protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.987
CSBG_01972	atpB-2	CSBG_01972	CSBG_02865	Hypothetical protein.	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	0.991
CSBG_01972	atpC	CSBG_01972	CSBG_02858	Hypothetical protein.	Hypothetical protein; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.987
CSBG_01972	atpD-2	CSBG_01972	CSBG_02859	Hypothetical protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.988
CSBG_01972	atpF-2	CSBG_01972	CSBG_02863	Hypothetical protein.	ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.	0.987
CSBG_01972	atpG	CSBG_01972	CSBG_02860	Hypothetical protein.	ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.987
CSBG_01972	atpH	CSBG_01972	CSBG_02862	Hypothetical protein.	ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.987
CSBG_02405	CSBG_02406	CSBG_02405	CSBG_02406	Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	HAD hydrolase, family IA.	0.925
CSBG_02406	CSBG_01972	CSBG_02406	CSBG_01972	HAD hydrolase, family IA.	Hypothetical protein.	0.939
CSBG_02406	CSBG_02405	CSBG_02406	CSBG_02405	HAD hydrolase, family IA.	Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.925
CSBG_02406	atpA-2	CSBG_02406	CSBG_02861	HAD hydrolase, family IA.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.871
CSBG_02406	atpB-2	CSBG_02406	CSBG_02865	HAD hydrolase, family IA.	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	0.872
CSBG_02406	atpC	CSBG_02406	CSBG_02858	HAD hydrolase, family IA.	Hypothetical protein; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.868
CSBG_02406	atpD-2	CSBG_02406	CSBG_02859	HAD hydrolase, family IA.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.890
CSBG_02406	atpF-2	CSBG_02406	CSBG_02863	HAD hydrolase, family IA.	ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.	0.883
CSBG_02406	atpG	CSBG_02406	CSBG_02860	HAD hydrolase, family IA.	ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.891
CSBG_02406	atpH	CSBG_02406	CSBG_02862	HAD hydrolase, family IA.	ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.887
CSBG_02406	lgt	CSBG_02406	CSBG_03376	HAD hydrolase, family IA.	Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	0.924
atpA-2	CSBG_01972	CSBG_02861	CSBG_01972	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	Hypothetical protein.	0.987