Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_02424Hypothetical protein. (122 aa)    
Predicted Functional Partners:
CSBG_01236
Putative sporulation protein YtxC.
  
    0.673
CSBG_01079
Hypothetical protein.
  
     0.532
CSBG_00765
Hypothetical protein.
   
    0.529
CSBG_02705
ATP-dependent protease LonB.
  
     0.502
CSBG_02648
NifU family SUF system FeS assembly protein.
   
    0.482
CSBG_02425
Hypothetical protein.
       0.478
CSBG_01060
Phage minor structural protein.
  
     0.477
CSBG_03152
Hypothetical protein.
 
     0.469
CSBG_00892
Hypothetical protein.
 
     0.449
CSBG_01467
Hypothetical protein.
  
     0.438
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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