STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_02446Sporulation protein YqfC. (92 aa)    
Predicted Functional Partners:
CSBG_02445
Sporulation protein YqfD.
 
  
 0.996
CSBG_01300
Stage III sporulation protein AD.
  
  
 0.865
CSBG_01802
Sporulation integral membrane protein YlbJ.
 
   
 0.820
CSBG_01298
Stage III sporulation protein AB.
  
  
 0.800
CSBG_01319
Stage II sporulation protein M.
  
   
 0.796
CSBG_01303
Stage III sporulation protein AG.
  
  
 0.787
CSBG_01297
Stage III sporulation protein AA.
  
   
 0.779
CSBG_01301
Stage III sporulation protein AE.
  
  
 0.771
CSBG_02444
Hypothetical protein.
       0.769
CSBG_02853
Sporulation transcriptional regulator SpoIIID.
  
  
 0.738
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.