rpsU protein (Clostridium sp. 7243FAA) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpsU

30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (58 aa)

Predicted Functional Partners:

rpsO

0.997

rpsP

0.997

rpsT

0.997

rpsL

0.994

rpsB

0.994

rpsF

0.994

rpsJ

0.993

rpsI

0.991

rpmB

0.991

rpsR

0.991

Your Current Organism:

Clostridium sp. 7243FAA

NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpmB	rpsB	CSBG_01809	CSBG_01775	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.988
rpmB	rpsF	CSBG_01809	CSBG_03290	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.992
rpmB	rpsI	CSBG_01809	CSBG_00082	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.991
rpmB	rpsJ	CSBG_01809	CSBG_00045	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.991
rpmB	rpsL	CSBG_01809	CSBG_00041	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.992
rpmB	rpsO	CSBG_01809	CSBG_01755	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.994
rpmB	rpsP	CSBG_01809	CSBG_01788	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rpmB	rpsR	CSBG_01809	CSBG_03292	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.992
rpmB	rpsT	CSBG_01809	CSBG_02465	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.994
rpmB	rpsU	CSBG_01809	CSBG_02447	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.991
rpsB	rpmB	CSBG_01775	CSBG_01809	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.988
rpsB	rpsF	CSBG_01775	CSBG_03290	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.998
rpsB	rpsI	CSBG_01775	CSBG_00082	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsB	rpsJ	CSBG_01775	CSBG_00045	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
rpsB	rpsL	CSBG_01775	CSBG_00041	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.999
rpsB	rpsO	CSBG_01775	CSBG_01755	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rpsB	rpsP	CSBG_01775	CSBG_01788	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rpsB	rpsR	CSBG_01775	CSBG_03292	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.999
rpsB	rpsT	CSBG_01775	CSBG_02465	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.997
rpsB	rpsU	CSBG_01775	CSBG_02447	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.994