Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_02653TIGR03987 family protein. (130 aa)    
Predicted Functional Partners:
CSBG_02654
Hypothetical protein.
 
     0.761
CSBG_01467
Hypothetical protein.
  
     0.535
CSBG_02568
Hypothetical protein.
  
     0.518
CSBG_00739
Hypothetical protein.
  
     0.464
CSBG_01382
Hypothetical protein.
  
     0.435
CSBG_02648
NifU family SUF system FeS assembly protein.
       0.435
CSBG_02652
FeS assembly ATPase SufC.
       0.426
CSBG_00830
Hypothetical protein.
 
     0.414
CSBG_00773
Hypothetical protein.
  
     0.407
CSBG_02649
Cysteine desulfurase, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.405
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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