Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_02662Hypothetical protein. (225 aa)    
Predicted Functional Partners:
CSBG_00604
Hypothetical protein.
  
  
 
0.886
CSBG_02660
Diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.877
CSBG_00606
Hypothetical protein.
    
  0.869
CSBG_02663
Hypothetical protein.
     
 0.847
CSBG_02661
Hypothetical protein.
       0.840
CSBG_02664
Hypothetical protein.
     
 0.795
CSBG_03169
Hypothetical protein.
 
  
  0.627
CSBG_01937
Hypothetical protein.
    
  0.572
CSBG_02535
Hypothetical protein.
  
     0.530
CSBG_02536
Hypothetical protein.
  
     0.516
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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