Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_03009Hypothetical protein. (352 aa)    
Predicted Functional Partners:
CSBG_01236
Putative sporulation protein YtxC.
 
     0.732
CSBG_01301
Stage III sporulation protein AE.
  
    0.684
CSBG_01302
Stage III sporulation protein AF.
  
    0.675
CSBG_03010
Hypothetical protein.
       0.671
CSBG_01298
Stage III sporulation protein AB.
  
    0.636
CSBG_02436
CotS family spore coat protein.
  
     0.628
CSBG_02705
ATP-dependent protease LonB.
  
     0.616
CSBG_03296
Lon family ATP-dependent protease.
  
     0.595
CSBG_02685
Stage V sporulation protein B.
  
    0.584
CSBG_00688
Hypothetical protein.
  
    0.578
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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