Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_03263Hypothetical protein. (95 aa)    
Predicted Functional Partners:
CSBG_03261
Hypothetical protein.
 
     0.737
CSBG_03264
Hypothetical protein.
       0.590
CSBG_03265
Hypothetical protein.
       0.590
CSBG_03245
Hypothetical protein.
 
     0.585
CSBG_01060
Phage minor structural protein.
  
     0.545
CSBG_02604
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
  
     0.457
CSBG_03262
Hypothetical protein.
       0.443
CSBG_01034
Hypothetical protein.
  
     0.439
CSBG_00698
Hypothetical protein.
 
     0.434
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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